ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5mdkL2 - ECOD Domain | ECOD

ECOD/Domains/e5mdkL2

e5mdkL2

UID: 002162209

PDB

Range: L:3-53,L:563-603
PDB: 5MDK chain L(all domains)
UniProt: P31891 (all domains)
Gene: hoxG

Molecule: Uptake hydrogenase large subunit; HOXG

3D Structure

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Related Domains

Browse other domains in NiFeSe_Hases, HoxH →

Classification

AArchitecturea+b two layers(a.11)

XX-groupFAD-linked reductases, C-terminal domain-like(244)

HH-groupNi-Fe binding domain in nickel-iron hydrogenase large subunit(244.4)

TT-groupNi-Fe binding domain in nickel-iron hydrogenase large subunit(244.4.1)

FFamilyNiFeSe_Hases, HoxH(244.4.1.3)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
Ni-fe oxidized active centerNFV

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00374NiFeSe_Hases

Nickel-dependent hydrogenase

HoxL-like

External Links

ECOD PDB View: 5MDK RCSB PDB: 5MDK PDBe: 5MDK UniProt: P31891

Downloads

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