ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ncdC1 - ECOD Domain | ECOD

ECOD/Domains/e5ncdC1

e5ncdC1

UID: 002162267

PDB

Range: C:68-273
PDB: 5NCD chain C(all domains)
UniProt: Q81EJ6 (all domains)
Gene: BC_1974

Molecule: Peptidoglycan N-acetylglucosamine deacetylase

3D Structure

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Related Domains

Browse other domains in Polysacc_deac_1 →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupGlycoside hydrolase/deacetylase(2002.3)

TT-groupGlycoside hydrolase/deacetylase(2002.3.1)

FFamilyPolysacc_deac_1(2002.3.1.2)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 2 additives (Acetate, Citric acid)

AcetateACT
DrugBank DB14511
Citric acid

Pfam Families

PF01522Polysacc_deac_1

Polysaccharide deacetylase

ClanCL0158GH_CE

External Links

ECOD PDB View: 5NCD RCSB PDB: 5NCD PDBe: 5NCD UniProt: Q81EJ6

Downloads

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DrugBank DB04272

Shown in the structure viewer. Drug annotations from DrugDomain.