ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5nelB1 - ECOD Domain | ECOD

ECOD/Domains/e5nelB1

e5nelB1

UID: 002162276

PDB

Range: B:68-273
PDB: 5NEL chain B(all domains)
UniProt: Q81EJ6 (all domains)
Gene: BC_1974

Molecule: Peptidoglycan N-acetylglucosamine deacetylase

3D Structure

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Related Domains

Browse other domains in Polysacc_deac_1 →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupGlycoside hydrolase/deacetylase(2002.3)

TT-groupGlycoside hydrolase/deacetylase(2002.3.1)

FFamilyPolysacc_deac_1(2002.3.1.2)

Ligands

in contact, ≤ 4 Å

(3AR,5R,6S,7R,7AR)-2-(ETHYLAMINO)-5-(HYDROXYMETHYL)-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D][1,3]THIAZOLE-6,7-DIOLNHT
Zinc ionZN
metal

+ 4 additives (Acetate, Citric acid, Triethylene glycol, …)

Acetate

Pfam Families

PF01522Polysacc_deac_1

Polysaccharide deacetylase

ClanCL0158GH_CE

External Links

ECOD PDB View: 5NEL RCSB PDB: 5NEL PDBe: 5NEL UniProt: Q81EJ6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14511

Citric acidCIT

DrugBank DB04272

Triethylene glycolPGE

DrugBank DB02327

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.