ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5oxqA2 - ECOD Domain | ECOD

ECOD/Domains/e5oxqA2

e5oxqA2

UID: 002162325

PDB

Range: A:210-478
PDB: 5OXQ chain A(all domains)
UniProt: Q5M4H8 (all domains)
Gene: dtpT

Molecule: Di-or tripeptide:H+ symporter

3D Structure

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Related Domains

Browse other domains in PTR2 →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupMajor facilitator superfamily (MFS) general substrate transporter(5050)

HH-groupMajor facilitator superfamily (MFS) general substrate transporter(5050.1)

TT-groupMajor facilitator superfamily (MFS) general substrate transporter(5050.1.1)

FFamilyPTR2(5050.1.1.2)

Ligands

in contact, ≤ 4 Å

(2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE78M
(2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE78N
Sodium ionNA
metal

+ 3 additives (HEPES, Pentaethylene glycol, Phosphate ion)

HEPES

Pfam Families

POT family

ClanCL0015MFS

External Links

ECOD PDB View: 5OXQ RCSB PDB: 5OXQ PDBe: 5OXQ UniProt: Q5M4H8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB16872

Pentaethylene glycol1PE

Phosphate ionPO4

Shown in the structure viewer. Drug annotations from DrugDomain.