ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5yrdA1 - ECOD Domain | ECOD

ECOD/Domains/e5yrdA1

e5yrdA1

UID: 002163008

PDB

Range: A:8-248
PDB: 5YRD chain A(all domains)
UniProt: P11041 (all domains)

Molecule: Polyhedrin

3D Structure

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Related Domains

Browse other domains in Cypo_polyhedrin →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupPolyhedrin(10.27)

TT-groupPolyhedrin(10.27.1)

FFamilyCypo_polyhedrin(10.27.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF05865Cypo_polyhedrin

Cypovirus polyhedrin protein

External Links

ECOD PDB View: 5YRD RCSB PDB: 5YRD PDBe: 5YRD UniProt: P11041

Downloads

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