ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5oi2A1 - ECOD Domain | ECOD

ECOD/Domains/e5oi2A1

e5oi2A1

UID: 002163894

PDB

Range: A:57-208
PDB: 5OI2 chain A(all domains)
UniProt: P03366 (all domains)
Gene: gag-pol

Molecule: Integrase

3D Structure

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Related Domains

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Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

(2~{S})-2-[4-(4,4-dimethylcyclohexen-1-yl)-2-methyl-5-pyridin-4-yl-thiophen-3-yl]-2-[(2-methylpropan-2-yl)oxy]ethanoic acid9VN
Magnesium ionMG
metal

+ 1 additive (Sulfate ion)

Sulfate ion

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 5OI2 RCSB PDB: 5OI2 PDBe: 5OI2 UniProt: P03366

Downloads

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DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.