ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5v37A1 - ECOD Domain | ECOD

ECOD/Domains/e5v37A1

e5v37A1

UID: 002163920

PDB

Range: A:3-267
PDB: 5V37 chain A(all domains)
UniProt: Q9H7B4 (all domains)
Gene: SMYD3

Molecule: Histone-lysine N-methyltransferase SMYD3

3D Structure

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Related Domains

Browse other domains in SET, zf-MYND →

Classification

AArchitecturebeta barrels(a.1)

XX-groupbeta-clip(70)

HH-groupSET domain-like(70.3)

TT-groupSET domain-like(70.3.1)

FFamilySET, zf-MYND(70.3.1.11)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118
N-{(3-endo)-8-[(trans-4-aminocyclohexyl)sulfonyl]-8-azabicyclo[3.2.1]octan-3-yl}-5-cyclopropyl-1,2-oxazole-3-carboxamide8WD
Zinc ion

Pfam Families

SET domain

ClanCL0489SAF

PF01753zf-MYND

MYND finger

ClanCL0175TRASH

External Links

ECOD PDB View: 5V37 RCSB PDB: 5V37 PDBe: 5V37 UniProt: Q9H7B4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 2 additives (Dimethyl sulfoxide, 1,2-ETHANEDIOL)

Dimethyl sulfoxideDMS
DrugBank DB01093
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.