ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6bq5A1 - ECOD Domain | ECOD

ECOD/Domains/e6bq5A1

e6bq5A1

UID: 002164865

PDB

Range: A:80-315
PDB: 6BQ5 chain A(all domains)
UniProt: G7K2D1 (all domains)
Gene: 11439099

Molecule: Thermospermine synthase ACAULIS protein

3D Structure

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Related Domains

Browse other domains in Spermine_synth →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilySpermine_synth(2003.1.5.13)

Ligands

in contact, ≤ 4 Å

2-[3-(2-Hydroxy-1,1-Dihydroxymethyl-Ethylamino)-Propylamino]-2-Hydroxymethyl-Propane-1,3-DiolB3P
drugDrugBank DB02676
5'-S-methyl-5'-thioadenosineMTA
drug

Pfam Families

PF01564Spermine_synth

Spermine/spermidine synthase domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 6BQ5 RCSB PDB: 6BQ5 PDBe: 6BQ5 UniProt: G7K2D1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB02282

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.