ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6c86B1 - ECOD Domain | ECOD

ECOD/Domains/e6c86B1

e6c86B1

UID: 002164928

PDB

Range: B:188-545
PDB: 6C86 chain B(all domains)
UniProt: Q5CR27 (all domains)
Gene: cgd4_2370

Molecule: Lysine--tRNA ligase

3D Structure

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Related Domains

Browse other domains in tRNA-synt_2 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupClass II aaRS and biotin synthetases(314)

HH-groupClass II aaRS and biotin synthetases(314.1)

TT-groupClass II aaRS and biotin synthetases(314.1.1)

FFamilytRNA-synt_2(314.1.1.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
5'-O-[(L-LYSYLAMINO)SULFONYL]ADENOSINEKAA

+ 2 additives (Sulfate ion, 1,2-ETHANEDIOL)

Sulfate ionSO4

Pfam Families

PF00152tRNA-synt_2

tRNA synthetases class II (D, K and N)

ClanCL0040tRNA_synt_II

External Links

ECOD PDB View: 6C86 RCSB PDB: 6C86 PDBe: 6C86 UniProt: Q5CR27

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.