ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6cbqB1 - ECOD Domain | ECOD

ECOD/Domains/e6cbqB1

e6cbqB1

UID: 002164964

PDB

Range: B:4-175
PDB: 6CBQ chain B(all domains)
UniProt: Q9RMS5 (all domains)
Gene: phzR

Molecule: LuxR family transcriptional regulator

3D Structure

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Related Domains

Browse other domains in Autoind_bind →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupsensor domains(223.1)

TT-groupsensor domains(223.1.1)

FFamilyAutoind_bind(223.1.1.7)

Ligands

in contact, ≤ 4 Å

(2S)-2-hexyl-N-[(3S)-2-oxooxolan-3-yl]decanamideEVY

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF03472Autoind_bind

Autoinducer binding domain

ClanCL0161GAF

External Links

ECOD PDB View: 6CBQ RCSB PDB: 6CBQ PDBe: 6CBQ UniProt: Q9RMS5

Downloads

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