ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5n5gA1 - ECOD Domain | ECOD

ECOD/Domains/e5n5gA1

e5n5gA1

UID: 002167223

PDB

Range: A:27-259
PDB: 5N5G chain A(all domains)
UniProt: Q9XAY4 (all domains)
Gene: blaVIM

Molecule: Beta-lactamase VIM-1

3D Structure

Loading viewer...

Related Domains

Browse other domains in Lactamase_B →

Classification

AArchitecturea+b four layers(a.13)

XX-groupMetallo-hydrolase/oxidoreductase(247)

HH-groupMetallo-hydrolase/oxidoreductase(247.1)

TT-groupMetallo-hydrolase/oxidoreductase(247.1.1)

FFamilyLactamase_B(247.1.1.1)

Ligands

in contact, ≤ 4 Å

BicineBCN
drugDrugBank DB03709
Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00753Lactamase_B

Metallo-beta-lactamase superfamily

ClanCL0381Metallo-HOrase

External Links

ECOD PDB View: 5N5G RCSB PDB: 5N5G PDBe: 5N5G UniProt: Q9XAY4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure