ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5xisB1 - ECOD Domain | ECOD

ECOD/Domains/e5xisB1

e5xisB1

UID: 002167479

PDB

Range: B:1-72
PDB: 5XIS chain B(all domains)
UniProt: P62983 (all domains)
Gene: Rps27a

Molecule: Ubiquitin-40S ribosomal protein S27a

3D Structure

Loading viewer...

Related Domains

Browse other domains in ubiquitin →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupUbiquitin-related(221.1)

TT-groupUbiquitin-like(221.1.1)

FFamilyubiquitin(221.1.1.2)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
beta-D-xylofuranoseXYZ

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00240ubiquitin

Ubiquitin family

ClanCL0072Ubiquitin

External Links

ECOD PDB View: 5XIS RCSB PDB: 5XIS PDBe: 5XIS UniProt: P62983

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure