ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5yixA1 - ECOD Domain | ECOD

ECOD/Domains/e5yixA1

e5yixA1

UID: 002167676

PDB

Range: A:128-198,A:231-483
PDB: 5YIX chain A(all domains)
UniProt: A0A0H3CAV3 (all domains)
Gene: rpoD

Molecule: RNA polymerase sigma factor RpoD

3D Structure

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Related Domains

Browse other domains in Sigma70_r2,Sigma70_ner →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupSigma2 domain-like(142)

HH-groupSigma2 domain of RNA polymerase sigma factors(142.1)

TT-groupSigma2 domain of RNA polymerase sigma factors(142.1.1)

FFamilySigma70_r2,Sigma70_ner(142.1.1.4)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive ((R,R)-2,3-BUTANEDIOL)

(R,R)-2,3-BUTANEDIOLBU3

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF04542Sigma70_r2

Sigma-70 region 2

ClanCL0123HTH

PF04546Sigma70_ner

Sigma-70, non-essential region

ClanCL0123HTH

External Links

ECOD PDB View: 5YIX RCSB PDB: 5YIX PDBe: 5YIX UniProt: A0A0H3CAV3

Downloads

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