ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6fkyB1 - ECOD Domain | ECOD

ECOD/Domains/e6fkyB1

e6fkyB1

UID: 002167843

PDB

Range: B:33-146,B:208-298
PDB: 6FKY chain B(all domains)
UniProt: Q6DHI5 (all domains)
Gene: sirt5

Molecule: NAD-dependent protein deacylase sirtuin-5, mitochondrial

3D Structure

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Related Domains

Browse other domains in SIR2 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupDHS-like NAD/FAD-binding domain(2003.1.4)

FFamilySIR2(2003.1.4.5)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal
Zinc ionZN
metal

+ 2 additives (HEPES, 1,2-ETHANEDIOL)

HEPESEPE

Pfam Families

Sir2 family

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 6FKY RCSB PDB: 6FKY PDBe: 6FKY UniProt: Q6DHI5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB16872

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.