ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5n9zN1 - ECOD Domain | ECOD

ECOD/Domains/e5n9zN1

e5n9zN1

UID: 002169285

PDB

Range: N:1-139
PDB: 5N9Z chain N(all domains)
UniProt: A0A384E0M3 (all domains)
Gene: RBCS

Molecule: Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit

3D Structure

Loading viewer...

Related Domains

Browse other domains in RuBisCO_small →

Classification

AArchitecturea+b two layers(a.11)

XX-groupReverse ferredoxin(302)

HH-groupRuBisCO, small subunit(302.2)

TT-groupRuBisCO, small subunit(302.2.1)

FFamilyRuBisCO_small(302.2.1.1)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metalwithin 5 Å only

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00101RuBisCO_small

Ribulose bisphosphate carboxylase, small chain

External Links

ECOD PDB View: 5N9Z RCSB PDB: 5N9Z PDBe: 5N9Z UniProt: A0A384E0M3

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure