ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5nxyC2 - ECOD Domain | ECOD

ECOD/Domains/e5nxyC2

e5nxyC2

UID: 002169337

PDB

Range: C:4-106,C:214-275
PDB: 5NXY chain C(all domains)
UniProt: Q45462 (all domains)
Gene: opuBC

Molecule: Osmotically activated L-carnitine/choline ABC transporter substrate-binding protein OpuCC

3D Structure

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Related Domains

Browse other domains in OpuAC →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyOpuAC(7523.1.1.17)

Ligands

in contact, ≤ 4 Å

2-(trimethyl-lambda~5~-arsanyl)ethanol1Y8

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Substrate binding domain of ABC-type glycine betaine transport system

ClanCL0177PBP

External Links

ECOD PDB View: 5NXY RCSB PDB: 5NXY PDBe: 5NXY UniProt: Q45462

Downloads

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