ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5oyjC1 - ECOD Domain | ECOD

ECOD/Domains/e5oyjC1

e5oyjC1

UID: 002169349

PDB

Range: C:516-549
PDB: 5OYJ chain C(all domains)
UniProt: P35968 (all domains)
Gene: KDR

Molecule: Vascular endothelial growth factor receptor 2

3D Structure

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Related Domains

Browse other domains in VEGFR-1-like_5th →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyVEGFR-1-like_5th(11.1.1.596)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Acetate, Cacodylate ion)

AcetateACT
DrugBank DB14511within 5 Å only
Cacodylate ionCAC

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF22971Ig_VEGFR-1-like_5th

VEGFR-1-like, immunoglobulin-like domain

ClanCL0159E-set

External Links

ECOD PDB View: 5OYJ RCSB PDB: 5OYJ PDBe: 5OYJ UniProt: P35968

Downloads

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