ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6cmmD1 - ECOD Domain | ECOD

ECOD/Domains/e6cmmD1

e6cmmD1

UID: 002169814

PDB

Range: D:23-341
PDB: 6CMM chain D(all domains)
UniProt: Q99986 (all domains)
Gene: VRK1

Molecule: Serine/threonine-protein kinase VRK1

3D Structure

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Related Domains

Browse other domains in Pkinase →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupProtein kinase(206.1.1)

FFamilyPkinase(206.1.1.1)

Ligands

in contact, ≤ 4 Å

(7R)-2-[(3,5-difluoro-4-hydroxyphenyl)amino]-7-methyl-5,8-di(prop-2-yn-1-yl)-7,8-dihydropteridin-6(5H)-oneF7D

+ 2 additives (Acetate, Sulfate ion)

AcetateACT
DrugBank DB14511
Sulfate ion

Pfam Families

PF00069Pkinase

Protein kinase domain

ClanCL0016PKinase

External Links

ECOD PDB View: 6CMM RCSB PDB: 6CMM PDBe: 6CMM UniProt: Q99986

Downloads

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DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.