ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5nv9A1 - ECOD Domain | ECOD

ECOD/Domains/e5nv9A1

e5nv9A1

UID: 002171444

PDB

Range: A:5-488
PDB: 5NV9 chain A(all domains)
UniProt: B4EZY7 (all domains)
Gene: siaT

Molecule: Putative sodium:solute symporter

3D Structure

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Related Domains

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Classification

AArchitecturealpha complex topology(a.10)

XX-groupSodium:neurotransmitter symporter family (SNF)-like(5051)

HH-groupSodium:neurotransmitter symporter family (SNF)-like(5051.1)

TT-groupSodium:neurotransmitter symporter family (SNF)-like(5051.1.1)

FFamilySSF(5051.1.1.3)

Ligands

in contact, ≤ 4 Å

N-acetyl-beta-neuraminic acidSLB
drugDrugBank DB04265
Sodium ionNA
metal

+ 2 additives (Phosphate ion, Dodecyl-beta-d-maltoside)

Phosphate ionPO4

Pfam Families

Sodium:solute symporter family

ClanCL0062APC

External Links

ECOD PDB View: 5NV9 RCSB PDB: 5NV9 PDBe: 5NV9 UniProt: B4EZY7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14523

Dodecyl-beta-d-maltosideLMT

Shown in the structure viewer. Drug annotations from DrugDomain.