ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5vcmB1 - ECOD Domain | ECOD

ECOD/Domains/e5vcmB1

e5vcmB1

UID: 002171624

RepresentativePDB

Range: B:78-445
PDB: 5VCM chain B(all domains)
UniProt: Q10469 (all domains)
Gene: MGAT2

Molecule: Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase

3D Structure

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Related Domains

Browse other domains in MGAT2 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupNucleotide-diphospho-sugar transferases(7516)

HH-groupNucleotide-diphospho-sugar transferases(7516.1)

TT-groupNucleotide-diphospho-sugar transferases(7516.1.1)

FFamilyMGAT2(7516.1.1.19)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
Uridine-5'-DiphosphateUDP
drugDrugBank DB03435

Pfam Families

N-acetylglucosaminyltransferase II (MGAT2)

ClanCL0110GT-A

External Links

ECOD PDB View: 5VCM RCSB PDB: 5VCM PDBe: 5VCM UniProt: Q10469

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

MANGANESE (II) ION

metal

+ 1 additive (Dimethyl sulfoxide)

Dimethyl sulfoxideDMS
DrugBank DB01093

Shown in the structure viewer. Drug annotations from DrugDomain.