ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6eliA2 - ECOD Domain | ECOD

ECOD/Domains/e6eliA2

e6eliA2

UID: 002171835

PDB

Range: A:429-554
PDB: 6ELI chain A(all domains)
UniProt: P03366 (all domains)
Gene: gag-pol

Molecule: reverse transcriptase

3D Structure

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Related Domains

Browse other domains in RNase_H →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyRNase_H(2484.1.1.4)

Ligands

in contact, ≤ 4 Å

methyl 4-azanyl-1-oxidanyl-2-oxidanylidene-1,8-naphthyridine-3-carboxylateBA5
Magnesium ionMG
metal

+ 1 additive (Sulfate ion)

Sulfate ion

Pfam Families

PF00075RNase_H

RNase H

ClanCL0219RNase_H

External Links

ECOD PDB View: 6ELI RCSB PDB: 6ELI PDBe: 6ELI UniProt: P03366

Downloads

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DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.