ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6f4qA1 - ECOD Domain | ECOD

ECOD/Domains/e6f4qA1

e6f4qA1

UID: 002172727

PDB

Range: A:183-416
PDB: 6F4Q chain A(all domains)
UniProt: Q8N371 (all domains)
Gene: KDM8

Molecule: JmjC domain-containing protein 5

3D Structure

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Related Domains

Browse other domains in Cupin_8 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilyCupin_8(10.12.1.52)

Ligands

in contact, ≤ 4 Å

MANGANESE (II) IONMN
metal
N-oxalylglycineOGA

+ 2 additives (Glycerin, Tromethamine)

GlycerinGOL

Pfam Families

PF13621Cupin_8

Cupin-like domain

ClanCL0029Cupin

External Links

ECOD PDB View: 6F4Q RCSB PDB: 6F4Q PDBe: 6F4Q UniProt: Q8N371

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

TromethamineTRS

DrugBank DB03754

Shown in the structure viewer. Drug annotations from DrugDomain.