ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1yhqB1 - ECOD Domain | ECOD

ECOD/Domains/e1yhqB1

e1yhqB1

UID: 000021735

PDB

Range: B:1-337
PDB: 1YHQ chain B(all domains)
UniProt: P20279 (all domains)
Gene: rpl3

Molecule: 50S ribosomal protein L3P

3D Structure

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Related Domains

Browse other domains in Ribosomal_L3 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupAlanine racemase-C(1.1.7)

FFamilyRibosomal_L3(1.1.7.2)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Magnesium ionMG
metal
Sodium ionNA
metal

Pfam Families

PF00297Ribosomal_L3

Ribosomal protein L3

ClanCL0866ALR_C-like

External Links

ECOD PDB View: 1YHQ RCSB PDB: 1YHQ PDBe: 1YHQ UniProt: P20279

Downloads

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Strontium ionSR

metal

Shown in the structure viewer. Drug annotations from DrugDomain.