ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3vpdA2 - ECOD Domain | ECOD

ECOD/Domains/e3vpdA2

e3vpdA2

UID: 000222866

PDB

Range: A:1-88
PDB: 3VPD chain A(all domains)
UniProt: Q5SH23 (all domains)
Gene: lysX

Molecule: Ribosomal protein S6 modification protein

3D Structure

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Related Domains

Browse other domains in LysX_preATP_grasp →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupPreATP-grasp domain(2003.1.10)

FFamilyLysX_preATP_grasp(2003.1.10.23)

Ligands

in contact, ≤ 4 Å

Butyric AcidBUA
drugDrugBank DB03568within 5 Å only

+ 1 additive (Citric acid)

Citric acidCIT
DrugBank DB04272

Pfam Families

PF22626LysX_preATP_grasp

LysX preATP-grasp domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 3VPD RCSB PDB: 3VPD PDBe: 3VPD UniProt: Q5SH23

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.