ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3dxjN9 - ECOD Domain | ECOD

ECOD/Domains/e3dxjN9

e3dxjN9

UID: 000223698

RepresentativePDB

Range: N:1201-1269,N:1331-1505
PDB: 3DXJ chain N(all domains)
UniProt: Q8RQE8 (all domains)
Gene: rpoC

Molecule: BACTERIAL RNA POLYMERASE BETA-PRIME SUBUNIT; CHAIN D, N

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb1_5 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupcentral helical domain in RNA-polymerase beta-prime subunit(4954)

HH-groupcentral helical domain in RNA-polymerase beta-prime subunit(4954.1)

TT-groupcentral helical domain in RNA-polymerase beta-prime subunit(4954.1.1)

FFamilyRNA_pol_Rpb1_5(4954.1.1.1)

Ligands

in contact, ≤ 4 Å

Methyl [(1E,5R)-5-{3-[(2E,4E)-2,5-dimethyl-2,4-octadienoyl]-2,4-dioxo-3,4-dihydro-2H-pyran-6-yl}hexylidene]carbamateNE6
drugDrugBank DB08266
Zinc ionZN
metal

Pfam Families

PF04998RNA_pol_Rpb1_5

RNA polymerase Rpb1, domain 5

External Links

ECOD PDB View: 3DXJ RCSB PDB: 3DXJ PDBe: 3DXJ UniProt: Q8RQE8

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.