ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2c5uA1 - ECOD Domain | ECOD

ECOD/Domains/e2c5uA1

e2c5uA1

UID: 000223711

RepresentativePDB

Range: A:1-252
PDB: 2C5U chain A(all domains)
UniProt: P00971 (all domains)
Gene: 63

Molecule: RNA LIGASE

3D Structure

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Related Domains

Browse other domains in RNA_lig_T4_1 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupATP-grasp(206.1.3)

FFamilyRNA_lig_T4_1(206.1.3.24)

Ligands

in contact, ≤ 4 Å

alpha,beta-Methyleneadenosine 5'-triphosphateAPC
drugDrugBank DB02596
Calcium ionCA
metal
Chloride ion

Pfam Families

PF09511RNA_lig_T4_1

RNA ligase

ClanCL0179ATP-grasp

External Links

ECOD PDB View: 2C5U RCSB PDB: 2C5U PDBe: 2C5U UniProt: P00971

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.