ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2c5uA2 - ECOD Domain | ECOD

ECOD/Domains/e2c5uA2

e2c5uA2

UID: 000223712

RepresentativePDB

Range: A:253-374
PDB: 2C5U chain A(all domains)
UniProt: P00971 (all domains)
Gene: 63

Molecule: RNA LIGASE

3D Structure

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Related Domains

Browse other domains in T4_Rnl1_C →

Classification

AArchitecturealpha arrays(a.6)

XX-groupT4 RNA ligase(3614)

HH-groupT4 RNA ligase(3614.1)

TT-groupT4 RNA ligase (Rnl1) C-terminal domain(3614.1.1)

FFamilyT4_Rnl1_C(3614.1.1.1)

Ligands

in contact, ≤ 4 Å

alpha,beta-Methyleneadenosine 5'-triphosphateAPC
drugDrugBank DB02596
Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF20819T4_Rnl1_C

T4 RNA ligase 1, C-terminal domain

External Links

ECOD PDB View: 2C5U RCSB PDB: 2C5U PDBe: 2C5U UniProt: P00971

Downloads

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