ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3nyyA1 - ECOD Domain | ECOD

ECOD/Domains/e3nyyA1

e3nyyA1

UID: 000223875

RepresentativePDB

Range: A:29-117
PDB: 3NYY chain A(all domains)
UniProt: A7B4J8 (all domains)
Gene: RUMGNA_02482

Molecule: Putative glycyl-glycine endopeptidase lytM

3D Structure

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Related Domains

Browse other domains in LytM_N →

Classification

AArchitecturealpha arrays(a.6)

XX-groupN-terminal domain of lytM(6090)

HH-groupN-terminal domain of lytM(6090.1)

TT-groupN-terminal domain of lytM(6090.1.1)

FFamilyLytM_N(6090.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Sulfate ion, Nonaethylene glycol)

Sulfate ionSO4
DrugBank DB14546
Nonaethylene glycol2PE

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

LytM, N-terminal domain

External Links

ECOD PDB View: 3NYY RCSB PDB: 3NYY PDBe: 3NYY UniProt: A7B4J8

Downloads

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