ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1dojA1 - ECOD Domain | ECOD

ECOD/Domains/e1dojA1

e1dojA1

UID: 000022768

PDB

Range: A:1C-247
PDB: 1DOJ chain A(all domains)
UniProt: P00734 (all domains)
Gene: F2

Molecule: ALPHA-THROMBIN

3D Structure

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Related Domains

Browse other domains in Trypsin,Thrombin_light →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel(1.1.5)

FFamilyTrypsin,Thrombin_light(1.1.5.2)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
N-methyl-D-phenylalanyl-N-{(1S)-4-carbamimidamido-1-[(6-carboxy-1,3-benzothiazol-2-yl)carbonyl]butyl}-L-prolinamide1Z0
Sodium ion

Pfam Families

PF00089Trypsin

Trypsin

ClanCL0124Peptidase_PA

PF09396Thrombin_light

Thrombin light chain

External Links

ECOD PDB View: 1DOJ RCSB PDB: 1DOJ PDBe: 1DOJ UniProt: P00734

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.