ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1op8E1 - ECOD Domain | ECOD

ECOD/Domains/e1op8E1

e1op8E1

UID: 000023089

PDB

Range: E:16-243
PDB: 1OP8 chain E(all domains)
UniProt: P12544 (all domains)
Gene: GZMA

Molecule: Granzyme A

3D Structure

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Related Domains

Browse other domains in Trypsin →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel 2(1.1.17)

FFamilyTrypsin(1.1.17.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00089Trypsin

Trypsin

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 1OP8 RCSB PDB: 1OP8 PDBe: 1OP8 UniProt: P12544

Downloads

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