ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1lqdB1 - ECOD Domain | ECOD

ECOD/Domains/e1lqdB1

e1lqdB1

UID: 000023122

PDB

Range: B:16-243
PDB: 1LQD chain B(all domains)
UniProt: P00742 (all domains)
Gene: F10

Molecule: Blood coagulation factor Xa

3D Structure

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Related Domains

Browse other domains in Trypsin →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel 2(1.1.17)

FFamilyTrypsin(1.1.17.1)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
1-(3-CARBAMIMIDOYL-BENZYL)-4-METHYL-1H-INDOLE-2-CARBOXYLIC ACID 3,5-DIMETHYL-BENZYLAMIDECMI

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00089Trypsin

Trypsin

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 1LQD RCSB PDB: 1LQD PDBe: 1LQD UniProt: P00742

Downloads

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