ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5olnB3 - ECOD Domain | ECOD

ECOD/Domains/e5olnB3

e5olnB3

UID: 002319272

PDB

Range: B:0-70
PDB: 5OLN chain B(all domains)
UniProt: P39142 (all domains)
Gene: pdp

Molecule: Pyrimidine-nucleoside phosphorylase

3D Structure

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Related Domains

Browse other domains in Glycos_trans_3N →

Classification

AArchitecturealpha arrays(a.6)

XX-groupNucleoside phosphorylase/phosphoribosyltransferase-N(184)

HH-groupNucleoside phosphorylase/phosphoribosyltransferase-N(184.1)

TT-groupNucleoside phosphorylase/phosphoribosyltransferase-N(184.1.1)

FFamilyGlycos_trans_3N(184.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Imidazole, 1,2-ETHANEDIOL)

ImidazoleIMD
DrugBank DB03366within 5 Å only
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF02885Glycos_trans_3N

Glycosyl transferase family, helical bundle domain

External Links

ECOD PDB View: 5OLN RCSB PDB: 5OLN PDBe: 5OLN UniProt: P39142

Downloads

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