ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5vkxA1 - ECOD Domain | ECOD

ECOD/Domains/e5vkxA1

e5vkxA1

UID: 002319294

PDB

Range: A:14-134
PDB: 5VKX chain A(all domains)
UniProt: P22629 (all domains)

Molecule: Streptavidin

3D Structure

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Related Domains

Browse other domains in Avidin →

Classification

AArchitecturebeta barrels(a.1)

XX-groupLipocalins/Streptavidin(9)

HH-groupAvidin/Streptavidin(9.2)

TT-groupAvidin/Streptavidin(9.2.1)

FFamilyAvidin(9.2.1.1)

Ligands

in contact, ≤ 4 Å

[N-(3-{bis[2-(pyridin-2-yl-kappaN)ethyl]amino-kappaN}ethyl)-5-(2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl)pentanamide](azido)copperS18
COPPER (II) IONCU
metalwithin 5 Å only

+ 1 additive (Glycerin)

Pfam Families

Avidin family

External Links

ECOD PDB View: 5VKX RCSB PDB: 5VKX PDBe: 5VKX UniProt: P22629

Downloads

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GlycerinGOL

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.