ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e6bxmB1 - ECOD Domain | ECOD

ECOD/Domains/e6bxmB1

e6bxmB1

UID: 002320098

PDB

Range: B:6-94
PDB: 6BXM chain B(all domains)
UniProt: A0A062UZ78 (all domains)
Gene: ANME2D_01646

Molecule: Diphthamide biosynthesis enzyme Dph2

3D Structure

Loading viewer...

Related Domains

Browse other domains in Diphthamide_syn →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupIron-sulphur enzyme Dph2(2007.1.16)

FFamilyDiphthamide_syn(2007.1.16.1)

Ligands

in contact, ≤ 4 Å

5'-S-methyl-5'-thioadenosineMTA
drugDrugBank DB02282
Alpha-aminobutyric acidABA
Iron/sulfur clusterSF4

Pfam Families

PF01866Diphthamide_syn

Putative diphthamide synthesis protein

External Links

ECOD PDB View: 6BXM RCSB PDB: 6BXM PDBe: 6BXM UniProt: A0A062UZ78

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Shown in the structure viewer. Drug annotations from DrugDomain.