ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6bxmB3 - ECOD Domain | ECOD

ECOD/Domains/e6bxmB3

e6bxmB3

UID: 002320100

PDB

Range: B:207-321
PDB: 6BXM chain B(all domains)
UniProt: A0A062UZ78 (all domains)
Gene: ANME2D_01646

Molecule: Diphthamide biosynthesis enzyme Dph2

3D Structure

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Related Domains

Browse other domains in Diphthamide_syn →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupIron-sulphur enzyme Dph2(2007.1.16)

FFamilyDiphthamide_syn(2007.1.16.1)

Ligands

in contact, ≤ 4 Å

5'-S-methyl-5'-thioadenosineMTA
drugDrugBank DB02282
Alpha-aminobutyric acidABA
Iron/sulfur clusterSF4

Pfam Families

PF01866Diphthamide_syn

Putative diphthamide synthesis protein

External Links

ECOD PDB View: 6BXM RCSB PDB: 6BXM PDBe: 6BXM UniProt: A0A062UZ78

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.