ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5vcmA1 - ECOD Domain | ECOD

ECOD/Domains/e5vcmA1

e5vcmA1

UID: 002320336

PDB

Range: A:86-447
PDB: 5VCM chain A(all domains)
UniProt: Q10469 (all domains)
Gene: MGAT2

Molecule: Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase

3D Structure

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Related Domains

Browse other domains in MGAT2 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupNucleotide-diphospho-sugar transferases(7516)

HH-groupNucleotide-diphospho-sugar transferases(7516.1)

TT-groupNucleotide-diphospho-sugar transferases(7516.1.1)

FFamilyMGAT2(7516.1.1.19)

Ligands

in contact, ≤ 4 Å

Uridine-5'-DiphosphateUDP
drugDrugBank DB03435
MANGANESE (II) IONMN
metal

+ 2 additives (Dimethyl sulfoxide, 1,2-ETHANEDIOL)

Pfam Families

N-acetylglucosaminyltransferase II (MGAT2)

ClanCL0110GT-A

External Links

ECOD PDB View: 5VCM RCSB PDB: 5VCM PDBe: 5VCM UniProt: Q10469

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Dimethyl sulfoxideDMS

DrugBank DB01093

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.