ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5y3zA1 - ECOD Domain | ECOD

ECOD/Domains/e5y3zA1

e5y3zA1

UID: 002320416

PDB

Range: A:137-277
PDB: 5Y3Z chain A(all domains)
UniProt: P55892 (all domains)
Gene: motB

Molecule: Motility protein B

3D Structure

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Related Domains

Browse other domains in OmpA →

Classification

AArchitecturea+b three layers(a.12)

XX-groupBacillus chorismate mutase-like(301)

HH-groupOmpA-like(301.3)

TT-groupOmpA-like(301.3.1)

FFamilyOmpA(301.3.1.1)

Ligands

in contact, ≤ 4 Å

ArginineARG
drugDrugBank DB00125

+ 2 additives (Imidazole, (4r)-2-Methylpentane-2,4-Diol)

ImidazoleIMD
DrugBank DB03366

Pfam Families

OmpA family

External Links

ECOD PDB View: 5Y3Z RCSB PDB: 5Y3Z PDBe: 5Y3Z UniProt: P55892

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(4r)-2-Methylpentane-2,4-Diol

DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.