ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5y3zB1 - ECOD Domain | ECOD

ECOD/Domains/e5y3zB1

e5y3zB1

UID: 002320417

PDB

Range: B:136-277
PDB: 5Y3Z chain B(all domains)
UniProt: P55892 (all domains)
Gene: motB

Molecule: Motility protein B

3D Structure

Loading viewer...

Related Domains

Browse other domains in OmpA →

Classification

AArchitecturea+b three layers(a.12)

XX-groupBacillus chorismate mutase-like(301)

HH-groupOmpA-like(301.3)

TT-groupOmpA-like(301.3.1)

FFamilyOmpA(301.3.1.1)

Ligands

in contact, ≤ 4 Å

ArginineARG
drugDrugBank DB00125

+ 2 additives (Imidazole, (4r)-2-Methylpentane-2,4-Diol)

ImidazoleIMD
DrugBank DB03366

Pfam Families

OmpA family

External Links

ECOD PDB View: 5Y3Z RCSB PDB: 5Y3Z PDBe: 5Y3Z UniProt: P55892

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(4r)-2-Methylpentane-2,4-Diol

DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.