ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5y5s41 - ECOD Domain | ECOD

ECOD/Domains/e5y5s41

e5y5s41

UID: 002320447

PDB

Range: 4:5-46
PDB: 5Y5S chain 4(all domains)
UniProt: D2Z0P1 (all domains)
Gene: pufB

Molecule: LH1 beta polypeptide

3D Structure

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Related Domains

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Classification

AArchitectureextended segments(a.20)

XX-groupBacterial light-harvesting complex subunits(5074)

HH-groupBacterial light-harvesting complex subunits(5074.1)

TT-groupBacterial light-harvesting complex subunits(5074.1.1)

FFamilyLHC(5074.1.1.1)

Ligands

in contact, ≤ 4 Å

Bacteriochlorophyll ABCL
drugDrugBank DB01853
Calcium ionCA
metal
Unknown ligand

Pfam Families

Antenna complex alpha/beta subunit

External Links

ECOD PDB View: 5Y5S RCSB PDB: 5Y5S PDBe: 5Y5S UniProt: D2Z0P1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

SpirilloxanthinCRT

within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.