ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5h3tD1 - ECOD Domain | ECOD

ECOD/Domains/e5h3tD1

e5h3tD1

UID: 002322384

PDB

Range: D:380-722
PDB: 5H3T chain D(all domains)
UniProt: Q8TEQ6 (all domains)
Gene: GEMIN5

Molecule: Gem-associated protein 5

3D Structure

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Related Domains

Browse other domains in WD40, ANAPC4_WD40, Beta-prop_RIG_2nd →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupbeta-propeller-like(5)

HH-groupbeta-propeller(5.1)

TT-group7-bladed(5.1.4)

FFamilyWD40, ANAPC4_WD40, Beta-prop_RIG_2nd(5.1.4.285)

Ligands

in contact, ≤ 4 Å

7-Methyl-7,8-dihydroguanosine 5'-(tetrahydrogen triphosphate)MGT
drugDrugBank DB03358

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Pfam Families

WD domain, G-beta repeat

ClanCL0186Beta_propeller

PF12894ANAPC4_WD40

Anaphase-promoting complex subunit 4 WD40 domain

ClanCL0186Beta_propeller

PF23775Beta-prop_RIG_2nd

RIG second beta-propeller

ClanCL0186Beta_propeller

External Links

ECOD PDB View: 5H3T RCSB PDB: 5H3T PDBe: 5H3T UniProt: Q8TEQ6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Shown in the structure viewer. Drug annotations from DrugDomain.