ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5v1sB1 - ECOD Domain | ECOD

ECOD/Domains/e5v1sB1

e5v1sB1

UID: 002322645

PDB

Range: B:1-439
PDB: 5V1S chain B(all domains)
UniProt: A0A0Z8EWX1 (all domains)
Gene: ERS132389_00250

Molecule: Radical SAM

3D Structure

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Related Domains

Browse other domains in Radical_SAM →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyRadical_SAM(2002.1.1.120)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118
Iron/sulfur clusterSF4

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF04055Radical_SAM

Radical SAM superfamily

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 5V1S RCSB PDB: 5V1S PDBe: 5V1S UniProt: A0A0Z8EWX1

Downloads

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