ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5odcD1 - ECOD Domain | ECOD

ECOD/Domains/e5odcD1

e5odcD1

UID: 002323902

RepresentativePDB

Range: D:3-140
PDB: 5ODC chain D(all domains)
UniProt: A0A2D0TC98 (all domains)

Molecule: Methyl-viologen reducing hydrogenase subunit D

3D Structure

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Related Domains

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Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupMethyl-viologen reducing hydrogenase subunit D(2007.22)

TT-groupMethyl-viologen reducing hydrogenase subunit D(2007.22.1)

FFamilyFlpD(2007.22.1.1)

Ligands

in contact, ≤ 4 Å

FE2/S2 (INORGANIC) CLUSTERFES

+ 2 additives (Glycerin, Tromethamine)

GlycerinGOL
DrugBank DB09462
TromethamineTRS

Pfam Families

Methyl-viologen-reducing hydrogenase, delta subunit

External Links

ECOD PDB View: 5ODC RCSB PDB: 5ODC PDBe: 5ODC UniProt: A0A2D0TC98

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03754

Shown in the structure viewer. Drug annotations from DrugDomain.