ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5vhvA1 - ECOD Domain | ECOD

ECOD/Domains/e5vhvA1

e5vhvA1

UID: 002323973

RepresentativePDB

Range: A:5-252
PDB: 5VHV chain A(all domains)
UniProt: C3K795 (all domains)
Gene: PFLU_2162

Molecule: alkylpurine DNA glycosylase AlkC

3D Structure

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Related Domains

Browse other domains in DNA_alkylation →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyDNA_alkylation(109.4.1.124)

Ligands

in contact, ≤ 4 Å

(2R,5R,13R,16R)-9-(hydroxymethyl)-9-{[(2R)-2-hydroxypropoxy]methyl}-5,13-dimethyl-4,7,11,14-tetraoxaheptadecane-2,16-diol9B4

+ 2 additives (Glycerin, 2-(N-morpholino)ethanesulfonic acid)

GlycerinGOL
DrugBank DB09462
2-(N-morpholino)ethanesulfonic acid

Pfam Families

PF08713DNA_alkylation

DNA alkylation repair enzyme

ClanCL0020TPR

External Links

ECOD PDB View: 5VHV RCSB PDB: 5VHV PDBe: 5VHV UniProt: C3K795

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03814

Shown in the structure viewer. Drug annotations from DrugDomain.