ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5vp3A1 - ECOD Domain | ECOD

ECOD/Domains/e5vp3A1

e5vp3A1

UID: 002325329

PDB

Range: A:1-195
PDB: 5VP3 chain A(all domains)
UniProt: E0WVU4 (all domains)
Gene: PP1

Molecule: Mnemiopsin 1

3D Structure

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Related Domains

Browse other domains in SPARC_Ca_bdg, EF-hand_5, EF-hand_7 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupEF-hand(108)

HH-groupEF-hand-related(108.1)

TT-groupEF-hand(108.1.1)

FFamilySPARC_Ca_bdg, EF-hand_5, EF-hand_7(108.1.1.136)

Ligands

in contact, ≤ 4 Å

Cadmium ionCD
metal
NICKEL (II) IONNI
metal
Thiocyanate ionSCN

Pfam Families

PF10591SPARC_Ca_bdg

Secreted protein acidic and rich in cysteine Ca binding region

ClanCL0220EF_hand

PF13202EF-hand_5

EF hand

ClanCL0220EF_hand

PF13499EF-hand_7

EF-hand domain pair

ClanCL0220EF_hand

External Links

ECOD PDB View: 5VP3 RCSB PDB: 5VP3 PDBe: 5VP3 UniProt: E0WVU4

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.