ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5np8A1 - ECOD Domain | ECOD

ECOD/Domains/e5np8A1

e5np8A1

UID: 002325504

PDB

Range: A:5-191
PDB: 5NP8 chain A(all domains)
UniProt: P00558 (all domains)
Gene: PGK1

Molecule: Phosphoglycerate kinase 1

3D Structure

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Related Domains

Browse other domains in PGK →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPhosphoglycerate kinase domain 1(7532)

HH-groupPhosphoglycerate kinase domain 1(7532.1)

TT-groupPhosphoglycerate kinase domain 1(7532.1.1)

FFamilyPGK(7532.1.1.1)

Ligands

in contact, ≤ 4 Å

3-phospho-D-glyceric acid3PG
drugDrugBank DB04510

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Phosphoglycerate kinase

External Links

ECOD PDB View: 5NP8 RCSB PDB: 5NP8 PDBe: 5NP8 UniProt: P00558

Downloads

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