ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5yrxA1 - ECOD Domain | ECOD

ECOD/Domains/e5yrxA1

e5yrxA1

UID: 002325584

PDB

Range: A:22-92
PDB: 5YRX chain A(all domains)
UniProt: P9WNR9 (all domains)
Gene: Rv3716c

Molecule: Nucleoid-associated protein Rv3716c

3D Structure

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Related Domains

Browse other domains in YbaB_DNA_bd →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRibonuclease PH domain 2-like(245)

HH-groupYbaB(245.2)

TT-groupYbaB(245.2.1)

FFamilyYbaB_DNA_bd(245.2.1.1)

Ligands

in contact, ≤ 4 Å

Cadmium ionCD
metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF02575YbaB_DNA_bd

YbaB/EbfC DNA-binding family

ClanCL0717YbaB

External Links

ECOD PDB View: 5YRX RCSB PDB: 5YRX PDBe: 5YRX UniProt: P9WNR9

Downloads

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