ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6cdeC3 - ECOD Domain | ECOD

ECOD/Domains/e6cdeC3

e6cdeC3

UID: 002325618

PDB

Range: C:31-119,C:203-255,C:474-505
PDB: 6CDE chain C(all domains)
UniProt: Q2N0S5 (all domains)
Gene: env

Molecule: Glycoprotein 120

3D Structure

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Related Domains

Browse other domains in GP120 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupgp120 inner domain(1061)

HH-groupgp120 inner domain(1061.1)

TT-groupgp120 inner domain(1061.1.1)

FFamilyGP120(1061.1.1.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141within 5 Å only
alpha-D-mannopyranoseMAN

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Envelope glycoprotein GP120

External Links

ECOD PDB View: 6CDE RCSB PDB: 6CDE PDBe: 6CDE UniProt: Q2N0S5

Downloads

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