ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3gkeC4 - ECOD Domain | ECOD

ECOD/Domains/e3gkeC4

e3gkeC4

UID: 002325783

PDB

Range: C:119-157,C:178-340
PDB: 3GKE chain C(all domains)
UniProt: Q5S3I3 (all domains)
Gene: ddmC

Molecule: DdmC

3D Structure

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Related Domains

Browse other domains in VanA_C →

Classification

AArchitecturea+b two layers(a.11)

XX-groupTBP-like(331)

HH-groupBet v1-like(331.3)

TT-groupBet v1-like(331.3.1)

FFamilyVanA_C(331.3.1.19)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Vanillate O-demethylase oxygenase C-terminal domain

ClanCL0209Bet_v_1_like

External Links

ECOD PDB View: 3GKE RCSB PDB: 3GKE PDBe: 3GKE UniProt: Q5S3I3

Downloads

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