ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ud5B1 - ECOD Domain | ECOD

ECOD/Domains/e5ud5B1

e5ud5B1

UID: 002326855

PDB

Range: B:1-86
PDB: 5UD5 chain B(all domains)
UniProt: Q8PWY1 (all domains)
Gene: pylS

Molecule: Pyrrolysine--tRNA ligase

3D Structure

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Related Domains

Browse other domains in PylS_N →

Classification

AArchitecturebeta barrels(a.1)

XX-groupSH3(4)

HH-groupPyrrolysyl-tRNA synthetase tRNA binding domain(4.29)

TT-groupPyrrolysyl-tRNA synthetase tRNA binding domain(4.29.1)

FFamilyPylS_N(4.29.1.1)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Pyrrolysyl-tRNA synthetase, N-terminal domain

External Links

ECOD PDB View: 5UD5 RCSB PDB: 5UD5 PDBe: 5UD5 UniProt: Q8PWY1

Downloads

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