ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5oqdB1 - ECOD Domain | ECOD

ECOD/Domains/e5oqdB1

e5oqdB1

UID: 002326870

PDB

Range: B:507-573
PDB: 5OQD chain B(all domains)
UniProt: Q24459 (all domains)
Gene: Pcl

Molecule: Polycomb protein Pcl

3D Structure

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Related Domains

Browse other domains in PHD_UBR7-like →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRING/U-box-like(376)

HH-groupRING/U-box-like(376.1)

TT-groupFYVE/PHD zinc finger(376.1.3)

FFamilyPHD_UBR7-like(376.1.3.56)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF30811PHD_UBR7-like

UBR7-like PHD finger

ClanCL0229RING

External Links

ECOD PDB View: 5OQD RCSB PDB: 5OQD PDBe: 5OQD UniProt: Q24459

Downloads

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